PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 524aa    MW: 58473.8 Da    PI: 6.3739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.8e-07274295223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  Kaladp0008s0200.2.p 274 FCTICGKGFKRDANLRMHMRGH 295
                          6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.6E-5272297No hitNo description
SMARTSM003550.0026273295IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03273300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5274324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
SMARTSM0035575322355IPR015880Zinc finger, C2H2-like
SMARTSM0035527360382IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MERKDRIHTE NWMRSGVLEN QFSRKSSPDC QYFSIPNQHS DQVEWKNSPF MDYEMRTHES  60
ASGSITNSNH TSSTLGDRNR LPKIPDNMNA QSNPVLQAGA NANWDPNAML NNLSFLEVKI  120
HQLQDMVHLI VGCKCQVANG LDEVTAQQQQ LISADLTSII VQLISTAGSL LPSVTQNILA  180
ANPAIGQLDG ILFPSENGMR SNILPPCNGG AQLDELSKQS DALVKNQVTE QNSLVDEHEM  240
KDEEDVEEGE HLPPGSYEIL QLEKDEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK  300
SPAALAKPNK ECTLEPVLIK RYSCPYFGCK RNKDHRKFQP LKTILCVKNH YKRSHCDKSF  360
TCSRCNTKKF SVIADLKTHE KHCGRDKWLC SCGTTFSRKD KLFGHIALFQ GHTPAIPLDD  420
KILAGTDQGE SSKLTSKVSG IQFNFSTNAP ISCGTSNQNM MDFKANLDDP VPCFSPVSFD  480
PCNLLAFNEF PRTTFEDSDT SFSFLIPGSF DYDQKSEGDS ELK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634509.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_002270196.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA5BSF50.0A5BSF5_VITVI; Putative uncharacterized protein
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-170C2H2 family protein